Command line: [exonerate -m p2g --showtargetgff --exhaustive yes -q proteina.fa -t SelP_Human.1.subseq.fa]
Hostname: [ws101123]

C4 Alignment:
------------
         Query: SelP_Human
        Target: KI538471.1:subseq(3614792,200266) Balaenoptera acutorostrata scammoni unplaced genomic scaffold scaffold82, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 1361
   Query range: 0 -> 381
  Target range: 101181 -> 94951

      1 : MetTrpArgSerLeuGlyLeuAlaLeuAlaLeuCysLeuLeuProSerGlyGlyThrG :     20
          |||||||||.!!|||||||||||||||||||||||||||||||||!!!||||||||||
          MetTrpArgGlyLeuGlyLeuAlaLeuAlaLeuCysLeuLeuProThrGlyGlyThrG
 101181 : ATGTGGAGAGGCCTGGGGCTGGCCCTGGCTCTTTGTCTCCTCCCCACGGGAGGAACAG : 101124

     21 : luSerGlnAspGlnSerSerLeuCysLysGlnProProAlaTrpSerIleArgAspGl :     39
          ||||||||!  |||||||||!!!|||||||||||||||||||||||||||!:!|||||
          luSerGlnGlyGlnSerSerPheCysLysGlnProProAlaTrpSerIleLysAspGl
 101123 : AGAGCCAGGGGCAAAGCTCCTTTTGTAAGCAACCTCCAGCCTGGAGCATAAAGGATCA : 101067

     40 : nAspProMetLeuAsnSerAsnGlySerValThrValValAlaLeuLeuGlnAlaSer :     58
          ||||||||||||||||||| !!||||||||||||||||||||||||||||||||||||
          nAspProMetLeuAsnSerTyrGlySerValThrValValAlaLeuLeuGlnAlaSer
 101066 : AGACCCCATGCTGAACTCCTATGGTTCAGTGACGGTGGTTGCTCTTCTTCAAGCCAGC : 101010

     59 : UnkTyrLeuCysIleLeuGlnAlaSer{Ly}  >>>> Target Intron 1 >>>> :     68
             ||||||||||||||||||||||||{!:}            741 bp         
          ***TyrLeuCysIleLeuGlnAlaSer{Ar}++                         
 101009 : TGATACCTGTGCATACTGCAGGCATCT{AG}gt......................... : 100976

     69 :   {s}LeuGluAspLeuArgValLysLeuLysLysGluGlyTyrSerAsnIleSerTy :     86
            {!}||||||||||||||||||||||||:!!||||||||||||||||||||||||||
          ++{g}LeuGluAspLeuArgValLysLeuGluLysGluGlyTyrSerAsnIleSerTy
 100975 : ag{a}tTGGAAGACCTGCGAGTAAAACTGGAGAAAGAAGGATATTCGAACATCTCTTA : 100185

     87 : rIleValValAsnHisGlnGlyIleSerSerArgLeuLysTyrThrHisLeuLysAsn :    105
          |:!!|||||||||||||||||||||||||||||||||||||||..!||||||||||||
          rValValValAsnHisGlnGlyIleSerSerArgLeuLysTyrValHisLeuLysAsn
 100184 : TGTTGTTGTTAATCATCAAGGAATCTCTTCTCGATTAAAATATGTGCATCTTAAAAAT : 100128

    106 : LysValSerGluHisIleProValTyrGlnGlnGluGluAsnGlnThrAspValTrpT :    125
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          LysValSerGluHisIleProValTyrGlnGlnGluGluAsnGlnThrAspValTrpT
 100127 : AAGGTTTCAGAGCATATTCCTGTTTACCAacaagaagaaaaccaaacagaTGTCTGGA : 100068

    126 : hrLeuLeuAsnGlySerLysAspAspPheLeuIleTyrAsp{Ar}  >>>> Target :    139
          ||||||||||||||!!!||||||||||||||||||||||||{||}           17
          hrLeuLeuAsnGlyThrLysAspAspPheLeuIleTyrAsp{Ar}++           
 100067 : CTCTATTAAATGGAACGAAAGATGACTTCCTCATATATGAC{Ag}gt........... : 100022

    140 :  Intron 2 >>>>  {g}CysGlyArgLeuValTyrHisLeuGlyLeuProPheSer :    152
          44 bp           {|}|||||||||||||||||||||||||||||||||!:!|||
                        ++{g}CysGlyArgLeuValTyrHisLeuGlyLeuProTyrSer
 100021 : ..............ag{a}tgtggCCGCCTTGTATATCATCTTGGTTTGCCTTATTCC :  98243

    153 : PheLeuThrPheProTyrValGluGluAlaIleLysIleAlaTyrCysGluLysLysC :    172
          |||||||||! ! !!:!!||||||!!:|||||||||! !!.!|||||||||!..||||
          PheLeuThrSerSerHisValGluAspAlaIleLysThrValTyrCysGluSerLysC
  98242 : TTCCTAACTTCCTCACATGTAGAAGACGCCATTAAGACTGTTTACTGTGAAAGTAAAT :  98183

    173 : ysGlyAsnCysSerLeuThr  >>>> Target Intron 3 >>>>  ThrLeuLys :    181
          |||||||||||||||||!             2608 bp           ||||||:!!
          ysGlyAsnCysSerLeuLys++                         ++ThrLeuGlu
  98182 : GTGGAAACTGCTCTCTCAAggt.........................agACACTGGAA :  95548

    182 : AspGluAspPheCysLysArgValSerLeuAlaThrValAspLysThrValGluThrP :    201
          ||||||! !|||||||||!.!|||||||||||||||! !!!:||||||..!|||...|
          AspGluGlyPheCysLysAsnValSerLeuAlaThrGluGluLysThrThrGluAlaP
  95547 : GATGAAGGCTTCTGTAAAAATGTATCTTTGGCTACTGAGGAAAAAACAACCGAGgctc :  95488

    202 : roSerProHisTyrHis<->HisGluHisHisHisAsnHisGlyHisGlnHisLeuGl :    219
          ||...|||...   |||   |||   |||   |||:::|||   |||...||||||! 
          roGlnProGlnProHisProHisProHisProHisHisHisProHisHisHisLeuGl
  95487 : cccagcctcagccccatccccatccccatccccatcaccatccccatcaccatcttGA :  95431

    220 : ySerSerGluLeuSerGluAsnGlnGlnProGlyAlaProAsnAlaProThrHisPro :    238
          !..!.!!.!.|||||||||:!!! !:!!|||! !||||||:!!  !|||  !||||||
          uAspGlyHisLeuSerGluHisProLysProGluAlaProAspAsnProGluHisPro
  95430 : GGACGGTCATCTTTCAGAGCATCCAAAACCAGAAGCACCAGATAACCCGGAGCATCCC :  95374

    239 : AlaProProGlyLeuHisHisHisHisLysHisLysGlyGlnHisArgGlnGlyHisP :    258
           !!||| !!|||||||||!.!||||||!:!|||::!|||!!.!!.|||||||||||| 
          ProProSerGlyLeuHisArgHisHisArgHisArgGlyHisGlnArgGlnGlyHisS
  95373 : CCTCCTTCAGGTCTTCATCGCCACCATAGGCACCGGGGTCACCAAAGACAGGGGCACT :  95314

    259 : roGluAsnArgAspMetProAlaSerGluAspLeuGlnAspLeuGlnLysLysLeuCy :    277
          !!|||||| !!|||         !!!  !.!.|||...  !! !||||||||||||!!
          erGluAsn***Asp---------ThrLeuGlnLeuSerLeuProGlnLysLysLeu**
  95313 : CAGAGAACTGAGAT---------ACATTACAACTTTCTCTTCCGCAAAAGAAGCTCTG :  95266

    278 : sArgLysArgCysIleAsnGlnLeuLeuCysLysLeuProThrAspSerGluLeuAla :    296
           |||!:! !!||||||||||||||||||   |||...|||   |||||||||! !|||
          *ArgArgGlyCysIleAsnGlnLeuLeu***LysPheProLysAspSerGluSerAla
  95265 : ACGAAGGGGATGCATAAATCAGTTActctgaaaatttcccaaagatTCAGAATCAGCT :  95209

    297 : ProArgSerUnkCysCysHisCysArgHisLeuIlePheGluLysThrGlySerAlaI :    316
          ! !!!!|||   |||!! |||||||||||||||||||||||||||||||||||||||:
          LeuSerSer***Cys***HisCysArgHisLeuIlePheGluLysThrGlySerAlaV
  95208 : CTGAGTAGCTGATGCTGACACTGCCGACATCTGATATTTGAAAAAACAGGGTCTGCAG :  95149

    317 : leThrUnkGlnCysLysGluAsnLeuProSerLeuCysSerUnkGlnGlyLeuArgAl :    335
          !!|||   |||||||||||||||||||||||||||||||||   |||||||||! !||
          alThr***GlnCysLysGluAsnLeuProSerLeuCysSer***GlnGlyLeuLeuAl
  95148 : TCACCTGACAGTGTAAAGAAAACCTCCCCTCTTTATGTAGCTGACAGGGCCTTCTGGC :  95092

    336 : aGluGluAsnIleThrGluSerCysGlnUnkArgLeuProProAlaAlaUnkGlnIle :    354
          |||||||:!!:!!|||||||||!! |||   ||||||||||||||||||   |||  !
          aGluGluHisValThrGluSer***Gln***ArgLeuProProAlaAlaCysGlnAla
  95091 : AGAGGAGCACGTCACTGAATCTTGACAGTGACGTTTGCCTCCAGCTGCCTGCCAGGCA :  95035

    355 : SerGlnGlnLeuIleProThrGluAlaSerAlaSerUnkArgUnkLysAsnGlnAlaL :    374
          ||||||||||||! !|||||||||||||||.!!!.!   !!!   :::...:::|||:
          SerGlnGlnLeuAsnProThrGluAlaSerThrLys***Ser***GluLysLysAlaG
  95034 : AGTCAGCAGCTCAACCCTACAGAAGCCAGCACCAAATGAAGCtgagaaaagaaggcag :  94975

    375 : ysLysUnkGluUnkProSerAsn :    381
          ::        !   |||||||||
          luMet***Thr***ProSerAsn
  94974 : aaatgtGAACATGAccttcaaat :  94952

vulgar: SelP_Human 0 381 . KI538471.1:subseq(3614792,200266) 101181 94951 - 1361 M 67 201 S 0 2 5 0 2 I 0 737 3 0 2 S 1 1 M 70 210 S 0 2 5 0 2 I 0 1740 3 0 2 S 1 1 M 39 117 5 0 2 I 0 2604 3 0 2 M 28 84 G 0 3 M 56 168 G 3 0 M 116 348
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2014-11-21
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KI538471.1:subseq(3614792,200266)	exonerate:protein2genome:local	gene	94952	101181	1361	-	.	gene_id 1 ; sequence SelP_Human ; gene_orientation +
KI538471.1:subseq(3614792,200266)	exonerate:protein2genome:local	cds	100979	101181	.	-	.	
KI538471.1:subseq(3614792,200266)	exonerate:protein2genome:local	exon	100979	101181	.	-	.	insertions 0 ; deletions 0
KI538471.1:subseq(3614792,200266)	exonerate:protein2genome:local	splice5	100977	100978	.	-	.	intron_id 1 ; splice_site "GT"
KI538471.1:subseq(3614792,200266)	exonerate:protein2genome:local	intron	100238	100978	.	-	.	intron_id 1
KI538471.1:subseq(3614792,200266)	exonerate:protein2genome:local	splice3	100238	100239	.	-	.	intron_id 0 ; splice_site "ag"
KI538471.1:subseq(3614792,200266)	exonerate:protein2genome:local	cds	100025	100237	.	-	.	
KI538471.1:subseq(3614792,200266)	exonerate:protein2genome:local	exon	100025	100237	.	-	.	insertions 0 ; deletions 0
KI538471.1:subseq(3614792,200266)	exonerate:protein2genome:local	splice5	100023	100024	.	-	.	intron_id 2 ; splice_site "gt"
KI538471.1:subseq(3614792,200266)	exonerate:protein2genome:local	intron	98281	100024	.	-	.	intron_id 2
KI538471.1:subseq(3614792,200266)	exonerate:protein2genome:local	splice3	98281	98282	.	-	.	intron_id 1 ; splice_site "ag"
KI538471.1:subseq(3614792,200266)	exonerate:protein2genome:local	cds	98163	98280	.	-	.	
KI538471.1:subseq(3614792,200266)	exonerate:protein2genome:local	exon	98163	98280	.	-	.	insertions 0 ; deletions 0
KI538471.1:subseq(3614792,200266)	exonerate:protein2genome:local	splice5	98161	98162	.	-	.	intron_id 3 ; splice_site "gt"
KI538471.1:subseq(3614792,200266)	exonerate:protein2genome:local	intron	95555	98162	.	-	.	intron_id 3
KI538471.1:subseq(3614792,200266)	exonerate:protein2genome:local	splice3	95555	95556	.	-	.	intron_id 2 ; splice_site "aG"
KI538471.1:subseq(3614792,200266)	exonerate:protein2genome:local	cds	94952	95554	.	-	.	
KI538471.1:subseq(3614792,200266)	exonerate:protein2genome:local	exon	94952	95554	.	-	.	insertions 3 ; deletions 3
KI538471.1:subseq(3614792,200266)	exonerate:protein2genome:local	similarity	94952	101181	1361	-	.	alignment_id 1 ; Query SelP_Human ; Align 101182 1 201 ; Align 100237 69 210 ; Align 98280 140 117 ; Align 95555 179 84 ; Align 95468 207 168 ; Align 95300 266 348
# --- END OF GFF DUMP ---
#
